Protein Structure Modeling
DeepMainmast is a de novo modeling protocol to build an entire protein 3D model directly from a near-atomic resolution EM map.
DNA/RNA Structure Modeling
CryoREAD is a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
View Example With InstructionsProtein Structure Model Assessment
DAQ is a computational tool using deep learning that can estimate the residue-wise local quality for protein models from cryo-EM maps.
View Example With InstructionsProtein Structure Model Refinement
DAQ-refine is a protocol using DAQ score to evaluate protein models from cryo-EM maps and employs a modified AlphaFold2 for refining regions with potential errors.
View Example With InstructionsProtein Secondary Structure Detection
Emap2sec+ is a computational tool that can accurately identify structures, alpha helices, beta sheets, other(coils/turns) and DNA/RNA, in cryo-Electron Microscopy (EM) maps of medium to low resolution.
View Example With InstructionsProtein Secondary Structure Detection
Emap2sec is a computational tool that can identify protein secondary structures in cryo-Electron Microscopy (EM) maps of medium to low resolution.
Map vs. Map Fitting Detection
VESPER is a map-map fitting Tool for Accurate Superimposition of EM Maps Using Mean Shift Algorithm and FFT.
Structure vs. Map Fitting Detection
VESPER(S2M) performs Structure-Map fitting by accurately superimposing Structure and EM Maps using Mean Shift Algorithm and FFT.
View Example With Instructions