Emap2sec+ is a computational tool that can accurately identify structures, alpha helices, beta sheets, other(coils/turns) and DNA/RNA, in cryo-Electron Microscopy (EM) maps of medium to low resolution.
Input file:
EM map file (mrc format file).
Parameter:
Contour Level. Please make sure your contour level is lower than your focused region. This is the absolute density threshold, not the standard deviation.
Result Visualization Panel:
Red indicates alpha helix, yellow indicates beta-strand, green indicates coil region of proteins, and purple indicates DNA/RNA.
Output Logs Panel:
The "Output Logs" panel include all the outputs from the scripts. If you are interested in the progress of the job during running, you can take a look at it.
Job Configuration Panel:
The "Job Configuration" panel includes the input parameters for this job, which is used to keep the records of your submitted input.
Problem Debugging:
If you encounter any problems, feel free to email us to report the problems. In your email, please use subject as "Emap2sec+ problem: [jobid]", here [jobid] is the job is shown in the title. We will use the jobid to locate and debug jobs in the backend and get back to you as soon as possible.
Contact:
dkihara@purdue.edu, gterashi@purdue.edu, xiaowang20140001@gmail.com.
Emap2sec+
