General
Basics of EMSuite Server.
Basics of EMSuite Server.
CryoREAD is a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
DeepMainmast is a de novo modeling protocol to build an entire protein 3D model directly from a near-atomic resolution EM map.
DAQ is a computational tool using deep learning for estimating the residue-wise local quality of protein models built from a cryo-EM map.
DAQ-refine is a protocol using DAQ score to evaluate protein models from cryo-EM maps and employs a modified AlphaFold2 to refine regions with potential errors.
ComplexModeler is a computational tool combines DiffModeler(seq) and CryoREAD to automatically build full protein-DNA/RNA complex structure from cryo-EM maps at 0-10A resolution (5-10 may work but DNA/RNA region will be bad).
DiffModeler is a computational tool using a diffusion model to automatically build full protein complex structure from cryo-EM maps at 0-20A resolution.
DAQfinder is a sequence database searching protocol using traced backbone models from a EM map of up to 5 A resolution.
Emap2sec is a computational tool that can identify protein secondary structures in cryo-Electron Microscopy (EM) maps of medium to low resolution.
Emap2sec+ is a computational tool that can accurately identify structures, alpha helices, beta sheets, other(coils/turns) and DNA/RNA, in cryo-Electron Microscopy (EM) maps of medium to low resolution.
VESPER is a map-map fitting Tool for Accurate Superimposition of EM Maps Using Mean Shift Algorithm and FFT.
Unlike VESPER for MAP-MAP fitting, VESPER(S2M) performs Structure-Map fitting by accurately superimposing Structure and EM Maps using Mean Shift Algorithm and FFT. The given structure model is converted into a density map and then superimposed onto it.
MainMast is a de novo modeling protocol to build an entire protein 3D model directly from near-atomic resolution EM map.