The RoadMap that you can access below contains 13 algorithms developed by Kihara Lab for structure modeling, validation and refinement of cryo-EM maps. After viewing the RoadMap you can choose any of the 13 algorithms to submit your job. For best results please view the Tutorial before submitting a job. Additionally, you will receive detailed instructions in the submission page on how to interpret output and prepare inputs.
| Category | Structure Type | Resolution | Methods |
|---|---|---|---|
| Structure Modeling | Protein | 0-5 Å |
DeepMainMast 0-5 Å 
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MainMast (single-chain only) 0-5 Å 
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| 0-20 Å |
DiffModeler (template input) 0-20 Å 
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DiffModeler (sequence input) 0-20 Å
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| DNA/RNA | 0-5 Å | CryoREAD 0-5 Å 
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| Protein-DNA/RNA Complex | 0-5 Å | ComplexModeler 0-5 Å 
|
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| Structure Validation | Protein | 0-5 Å | DAQ-Score 0-5 Å 
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| Structure Refinement | Protein | 0-5 Å | DAQ-Refine 0-5 Å 
|
| Unknown Protein Finding | Protein | 0-5 Å | DAQFinder 0-5 Å 
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| Secondary Structure Detection | Protein | 5-10 Å | Emap2sec 5-10 Å 
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| Protein-DNA/RNA Complex | 5-10 Å | Emap2sec+ 5-10 Å 
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| Structure Fitting | Map vs. Map | 0-20 Å | VESPER 0-20 Å 
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| Structure vs. Map | 0-20 Å | VESPER(S2M) 0-20 Å 
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