The RoadMap that you can access below contains 16 algorithms developed by Kihara Lab for structure modeling, validation and refinement of cryo-EM maps. After viewing the RoadMap you can choose any of the 16 algorithms to submit your job. For best results please view the Tutorial before submitting a job. Additionally, you will receive detailed instructions in the submission page on how to interpret output and prepare inputs.
| Category | Structure Type | Resolution | Methods |
|---|---|---|---|
| Structure Modeling | Protein | ~5 Å |
DeepMainMast ~5 Å 
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MainMast (single-chain only) ~5 Å 
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| ~15 Å |
DiffModeler (template input) ~15 Å 
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DiffModeler (sequence input) ~15 Å
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| 3-15 Å |
DMcloud 3-15 Å 
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| DNA/RNA | ~5 Å | CryoREAD ~5 Å 
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| Protein DNA/RNA Protein-DNA/RNA Complex |
~10 Å |
CryoZeta ~10 Å 
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DMcloudComplex ~10 Å
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| ~5 Å | ComplexModeler ~5 Å 
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| Ligand | ~6 Å |
Emap2lig ~6 Å 
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| Structure Validation | Protein | ~5 Å | DAQ-Score ~5 Å 
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| Structure Refinement | Protein | ~5 Å | DAQ-Refine ~5 Å 
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| Unknown Protein Finding | Protein | ~5 Å | DAQFinder ~5 Å 
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| Secondary Structure Detection | Protein | 5-10 Å | Emap2sec 5-10 Å 
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| Protein-DNA/RNA Complex | 5-10 Å | Emap2sec+ 5-10 Å 
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| Structure Fitting | Map vs. Map | ~20 Å | VESPER ~20 Å 
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| Structure vs. Map | ~20 Å | VESPER(S2M) ~20 Å 
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