DMcloud
If encounter problems, please contact Daisuke Kihara (dkihara@purdue.edu) or Xiao Wang (xiaowang20140001@gmail.com) or Genki Terashi (gterashi@purdue.edu)
Please simply click "Upload" when you filled all input fields.
If you are not sure, just use threshold 0, our model can automatically detect the structure regions.
Please adjust the contour level for the best fit. Set a contour level that is sufficiently low to cover the entire protein region as a continuous volume. DMcloud does not check map regions below (lower than) the contour level you specified. On the other hand, if you specify the contour level too low, it will take longer time for the program to check every voxels above the contour level.
After adjusting the contour level on the sliding window click "Update Contour Value" to visualize the volume. Note that the map may not be visualized when the map is large and the specified contour level is too low or the specified contour level is too high and the browser runs out of memory.
Please see the instruction for How to Preparing the PDB file. If your target is hetero oligomers, and you have multiple pdb files, please upload all.
