Job ID : e4d79fad8b977b5f9aea7899d58d9116

Emap2sec is a computational tool that can identify protein secondary structures in cryo-Electron Microscopy (EM) maps of medium to low resolution.

Input file:
    EM map file (mrc format file).
    Contour Level.   Please make sure your contour level is lower than your focused region. This is the absolute density threshold, not the standard deviation.

Result Visualization Panel:
The purple, yellow, and green spheres respectively represent the alpha helix, beta strands, and coil.

Output Logs Panel:
The "Output Logs" panel include all the outputs from the scripts. If you are interested in the progress of the job during running, you can take a look at it.

Job Configuration Panel:
The "Job Configuration" panel includes the input parameters for this job, which is used to keep the records of your submitted input.

Problem Debugging:
If you encounter any problems, feel free to email us to report the problems. In your email, please use subject as "Emap2sec+ problem: [jobid]", here [jobid] is the job is shown in the title. We will use the jobid to locate and debug jobs in the backend and get back to you as soon as possible.

dkihara@purdue.edu, gterashi@purdue.edu, xiaowang20140001@gmail.com.

Emap2sec is designed for protein secondary structure detection on cryo-EM maps at intermediate resolution (5-10A). Here purple indicates alpha helix, yellow indicate beta strands while green indicates coil. If the color is not shown properly, please click the color predictions button. We also have new version Emap2sec+ that can work for protein secondary structure and DNA/RNA structure detection. If you are not satisfied with the prediction there, feel free to try our new tool Emap2sec+.

-rw-r--r-- 1 webdklab kihara 30582516 Apr 24 12:26 /bio/kihara-web/www/em/em-web-server/media/jobs/input/e4d79fad8b977b5f9aea7899d58d9116//1733.mrc
INFO : Running Emap2sec.py with arguments data/input_file.txt
INFO : Running Emap2sec Phase1 for dataset data/dataset
INFO : Wrote the output of Phase1 to outputP1_dataset
INFO : Running Emap2sec Phase2 for dataset data/dataset
INFO : Wrote the output of Phase2 to outputP2_dataset
INFO : Running Visual.pl
INFO : Done

If the output looks wrong or the job has failed. You can submit it for review here.