Job is finished!
==> Total residues: 818, stages: 7
sending incremental file list
./
input.json

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input.map

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msa/
msa/prot/
msa/prot/prot.fasta

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msa/rna/
msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta

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Connection established.
INFO: cd /scratch/negishi/dklab/em-server/working/b32984bdc6cc5517ae43b4551c1f6b40/scratch/msa/prot/ && sbatch -J msa_prot_b32984bdc6cc5517ae43b4551c1f6b40 --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-mmseqs.sh prot.fasta
INFO: cd /scratch/negishi/dklab/em-server/working/b32984bdc6cc5517ae43b4551c1f6b40/scratch/msa/rna/ && sbatch -J msa_rna_DC64A4734A2D898F --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-rnamsa.sh FASTA/DC64A4734A2D898F.fasta

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[prot_MSA] Job 36424671 has completed.
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--- Monitoring 1 jobs: ['36424672'] ---
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[rna_MSA_DC64A4734A2D898F] Job 36424672 has completed.

All jobs have completed.
receiving incremental file list
msa/prot/
msa/prot/done.txt

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msa/prot/results.zip

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msa/prot/slurm-36424671.out

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msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m

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msa/prot/C6849859F9109C52/uniref100_hits.a3m

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msa/rna/
msa/rna/DC64A4734A2D898F/
msa/rna/DC64A4734A2D898F/done.txt

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msa/rna/DC64A4734A2D898F/rnacentral.a3m

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msa/rna/working/DC64A4734A2D898F.zip

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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/msa/rna/FASTA/ (in=0) (out=0) (stored 0%)
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/msa/rna/working/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/msa/rna/working/DC64A4734A2D898F.zip (in=6165) (out=6165) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/input.json (in=1996) (out=656) (deflated 67%)
total bytes=30459058, compressed=27677131 -> 9% savings
sending incremental file list
./
input.json

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input.map

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msa/
msa/prot/
msa/prot/done.txt

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msa/prot/prot.fasta

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msa/prot/results.zip

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msa/prot/slurm-36424671.out

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msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m

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msa/prot/C6849859F9109C52/uniref100_hits.a3m

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msa/rna/
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msa/rna/DC64A4734A2D898F/done.txt

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msa/rna/DC64A4734A2D898F/rnacentral.a3m

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msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta

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msa/rna/logs/
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==> Regular mode: job 10602421
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receiving incremental file list
./
CryoZeta_model_1.cif

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CryoZeta_model_3.cif

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CryoZeta_model_4.cif

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CryoZeta_model_5.cif

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done.txt

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slurm-10602421.out

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output/
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output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/
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output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/b32984bdc6cc5517ae43b4551c1f6b40_C1P.pdb

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output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.npz (in=107348) (out=105624) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.npz (in=107804) (out=106073) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.npz (in=106967) (out=105252) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_1.json (in=5160) (out=919) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=867788) (out=231260) (deflated 73%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_0.json (in=5180) (out=923) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_2.json (in=5171) (out=907) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_4.json (in=5160) (out=909) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=885054) (out=230717) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=876421) (out=229940) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=885054) (out=231535) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_3.json (in=5162) (out=953) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/ (in=0) (out=0) (stored 0%)
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4_teaser.npz (in=100676) (out=98952) (deflated 2%)
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2_teaser.npz (in=100624) (out=98923) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0_teaser.npz (in=100653) (out=98942) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1_teaser.npz (in=100662) (out=98948) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213273) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213328) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213528) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213435) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213269) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/atom_arrays/ (in=0) (out=0) (stored 0%)
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4_svd.npz (in=100643) (out=98933) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1_svd.npz (in=100668) (out=98951) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213474) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213263) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213402) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Interpolate/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213374) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/ (in=0) (out=0) (stored 0%)
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adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/saved_data/scores.csv (in=1882) (out=658) (deflated 65%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/saved_data/output_dict_b32984bdc6cc5517ae43b4551c1f6b40.pt . (in=11900303) (out=6853610) (deflated 42%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213172) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.npz (in=100646) (out=98938) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.npz (in=100639) (out=98923) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.npz (in=100610) (out=98904) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.npz (in=100655) (out=98930) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.npz (in=100626) (out=98917) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213309) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213386) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213180) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_superimposed/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213072) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213469) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.npz (in=100609) (out=98897) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.npz (in=100621) (out=98917) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.npz (in=100661) (out=98942) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.npz (in=100640) (out=98933) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.npz (in=100655) (out=98930) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213367) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213191) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213172) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.4/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213365) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=885054) (out=231697) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.npz (in=107491) (out=105764) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.npz (in=107177) (out=105457) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.npz (in=107353) (out=105626) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.npz (in=107843) (out=106110) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.npz (in=107341) (out=105612) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_1.json (in=5221) (out=856) (deflated 84%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=867788) (out=230142) (deflated 73%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_0.json (in=5224) (out=915) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_2.json (in=5211) (out=897) (deflated 83%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_4.json (in=5218) (out=948) (deflated 82%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=876421) (out=230125) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=867788) (out=230303) (deflated 73%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=893687) (out=232399) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions/b32984bdc6cc5517ae43b4551c1f6b40_summary_confidence_sample_3.json (in=5223) (out=868) (deflated 83%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213181) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4_teaser.npz (in=100610) (out=98912) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3_teaser.npz (in=100646) (out=98938) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2_teaser.npz (in=100629) (out=98918) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0_teaser.npz (in=100626) (out=98917) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1_teaser.npz (in=100661) (out=98951) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213360) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213072) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213180) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_teaser/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213280) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213343) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_2_svd.npz (in=100635) (out=98930) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_0_svd.npz (in=100639) (out=98923) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_3_svd.npz (in=100622) (out=98916) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_4_svd.npz (in=100610) (out=98904) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/b32984bdc6cc5517ae43b4551c1f6b40_sample_1_svd.npz (in=100671) (out=98955) (deflated 2%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213345) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213337) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213309) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta/seed_101/predictions_svd_0.8/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213386) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/b32984bdc6cc5517ae43b4551c1f6b40.pt .. (in=29005143) (out=6489551) (deflated 78%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/b32984bdc6cc5517ae43b4551c1f6b40_timing.txt (in=204) (out=140) (deflated 31%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/b32984bdc6cc5517ae43b4551c1f6b40_C1P.pdb (in=8479) (out=1932) (deflated 77%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Detection/b32984bdc6cc5517ae43b4551c1f6b40_CA.pdb (in=46399) (out=10211) (deflated 78%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/ (in=0) (out=0) (stored 0%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/b32984bdc6cc5517ae43b4551c1f6b40_sample_2.cif (in=807357) (out=213172) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/b32984bdc6cc5517ae43b4551c1f6b40_sample_1.cif (in=807357) (out=213309) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/b32984bdc6cc5517ae43b4551c1f6b40_sample_3.cif (in=807357) (out=213386) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/b32984bdc6cc5517ae43b4551c1f6b40_sample_0.cif (in=807357) (out=213180) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/output/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta-Final/b32984bdc6cc5517ae43b4551c1f6b40_sample_4.cif (in=807357) (out=213072) (deflated 74%)
adding: b32984bdc6cc5517ae43b4551c1f6b40/scratch/input.json (in=1996) (out=656) (deflated 67%)
total bytes=137714783, compressed=66149762 -> 52% savings
Processing: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_1.cif as Model 1
Processing: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_2.cif as Model 2
Processing: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_3.cif as Model 3
Processing: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_4.cif as Model 4
Processing: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_5.cif as Model 5
<gemmi.cif.Block CryoZeta_prediction_b32984bdc6cc5517ae43b4551c1f6b40>
Creating output directory: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/
Joined file: /net/kihara/scratch/webdklab/em-server/b32984bdc6cc5517ae43b4551c1f6b40/CryoZeta_model_all.cif