CryoZeta
Job ID: a3244fec528e72cbb9b995c93db6f309
Likes
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Job is finished!
==> Total residues: 818, stages: 7
sending incremental file list
./
input.json
2.00K 100% 0.00kB/s 0:00:00
2.00K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=7/9)
input.map
32.77K 0% 31.25MB/s 0:00:00
28.31M 100% 178.81MB/s 0:00:00 (xfr#2, to-chk=6/9)
msa/
msa/prot/
msa/prot/prot.fasta
350 100% 2.22kB/s 0:00:00
350 100% 2.22kB/s 0:00:00 (xfr#3, to-chk=2/9)
msa/rna/
msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta
55 100% 0.35kB/s 0:00:00
55 100% 0.35kB/s 0:00:00 (xfr#4, to-chk=0/9)
Connection established.
INFO: cd /scratch/negishi/dklab/em-server/working/a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/ && sbatch -J msa_prot_a3244fec528e72cbb9b995c93db6f309 --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-mmseqs.sh prot.fasta
INFO: cd /scratch/negishi/dklab/em-server/working/a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/ && sbatch -J msa_rna_DC64A4734A2D898F --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-rnamsa.sh FASTA/DC64A4734A2D898F.fasta
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[prot_MSA] Job 40440438 has completed.
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Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
[rna_MSA_DC64A4734A2D898F] Job 40440439 has completed.
All jobs have completed.
receiving incremental file list
msa/prot/
msa/prot/done.txt
0 0% 0.00kB/s 0:00:00
29 100% 28.32kB/s 0:00:00 (xfr#1, to-chk=16/23)
msa/prot/results.zip
0 0% 0.00kB/s 0:00:00
951.64K 100% 20.17MB/s 0:00:00 (xfr#2, to-chk=14/23)
msa/prot/slurm-40440438.out
0 0% 0.00kB/s 0:00:00
81.86K 100% 327.63kB/s 0:00:00 (xfr#3, to-chk=13/23)
msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m
0 0% 0.00kB/s 0:00:00
690.13K 100% 811.99kB/s 0:00:00 (xfr#4, to-chk=11/23)
msa/prot/C6849859F9109C52/uniref100_hits.a3m
0 0% 0.00kB/s 0:00:00
196.61K 49% 183.73kB/s 0:00:01
327.68K 81% 138.29kB/s 0:00:00
399.79K 100% 168.65kB/s 0:00:02 (xfr#5, to-chk=10/23)
msa/rna/
msa/rna/DC64A4734A2D898F/
msa/rna/DC64A4734A2D898F/done.txt
0 0% 0.00kB/s 0:00:00
962 100% 117.43kB/s 0:00:00 (xfr#6, to-chk=5/23)
msa/rna/DC64A4734A2D898F/rnacentral.a3m
0 0% 0.00kB/s 0:00:00
44 100% 2.86kB/s 0:00:00 (xfr#7, to-chk=4/23)
msa/rna/logs/
msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log
0 0% 0.00kB/s 0:00:00
5.65K 100% 93.55kB/s 0:00:00 (xfr#8, to-chk=2/23)
msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log
0 0% 0.00kB/s 0:00:00
2.65K 100% 39.21kB/s 0:00:00 (xfr#9, to-chk=1/23)
msa/rna/working/
msa/rna/working/DC64A4734A2D898F.zip
0 0% 0.00kB/s 0:00:00
4.31K 100% 57.68kB/s 0:00:00 (xfr#10, to-chk=0/23)
adding: a3244fec528e72cbb9b995c93db6f309/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/uniref100_hits.a3m (in=399788) (out=84685) (deflated 79%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m (in=690128) (out=198600) (deflated 71%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/slurm-40440438.out (in=81860) (out=8285) (deflated 90%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/done.txt (in=29) (out=29) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/results.zip (in=951637) (out=951637) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/prot.fasta (in=350) (out=231) (deflated 34%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/rnacentral.a3m (in=44) (out=39) (deflated 11%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/done.txt (in=962) (out=583) (deflated 39%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/FASTA/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/FASTA/DC64A4734A2D898F.fasta (in=55) (out=50) (deflated 9%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log (in=5652) (out=1645) (deflated 71%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log (in=2650) (out=820) (deflated 69%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/working/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/working/DC64A4734A2D898F.zip (in=4312) (out=4312) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/input.json (in=1997) (out=655) (deflated 67%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/input.map .. (in=28312576) (out=26423561) (deflated 7%)
total bytes=30452040, compressed=27675132 -> 9% savings
sending incremental file list
./
input.json
2.00K 100% 0.00kB/s 0:00:00
2.00K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=21/23)
input.map
32.77K 0% 695.65kB/s 0:00:40
28.31M 100% 98.90MB/s 0:00:00 (xfr#2, to-chk=20/23)
msa/
msa/prot/
msa/prot/done.txt
29 100% 0.10kB/s 0:00:00
29 100% 0.10kB/s 0:00:00 (xfr#3, to-chk=16/23)
msa/prot/prot.fasta
350 100% 1.10kB/s 0:00:00
350 100% 1.10kB/s 0:00:00 (xfr#4, to-chk=15/23)
msa/prot/results.zip
32.77K 3% 102.56kB/s 0:00:08
951.64K 100% 2.86MB/s 0:00:00 (xfr#5, to-chk=14/23)
msa/prot/slurm-40440438.out
32.77K 40% 99.07kB/s 0:00:00
81.86K 100% 247.50kB/s 0:00:00 (xfr#6, to-chk=13/23)
msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m
32.77K 4% 98.77kB/s 0:00:06
690.13K 100% 2.01MB/s 0:00:00 (xfr#7, to-chk=11/23)
msa/prot/C6849859F9109C52/uniref100_hits.a3m
32.77K 8% 97.86kB/s 0:00:03
399.79K 100% 1.16MB/s 0:00:00 (xfr#8, to-chk=10/23)
msa/rna/
msa/rna/DC64A4734A2D898F/
msa/rna/DC64A4734A2D898F/done.txt
962 100% 2.84kB/s 0:00:00
962 100% 2.84kB/s 0:00:00 (xfr#9, to-chk=5/23)
msa/rna/DC64A4734A2D898F/rnacentral.a3m
44 100% 0.13kB/s 0:00:00
44 100% 0.13kB/s 0:00:00 (xfr#10, to-chk=4/23)
msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta
55 100% 0.16kB/s 0:00:00
55 100% 0.16kB/s 0:00:00 (xfr#11, to-chk=3/23)
msa/rna/logs/
msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log
5.65K 100% 15.95kB/s 0:00:00
5.65K 100% 15.95kB/s 0:00:00 (xfr#12, to-chk=2/23)
msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log
2.65K 100% 7.46kB/s 0:00:00
2.65K 100% 7.46kB/s 0:00:00 (xfr#13, to-chk=1/23)
msa/rna/working/
msa/rna/working/DC64A4734A2D898F.zip
4.31K 100% 12.10kB/s 0:00:00
4.31K 100% 12.10kB/s 0:00:00 (xfr#14, to-chk=0/23)
==> Regular mode: job 11245929
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Total residues: 818, stages: 7
sending incremental file list
./
input.json
2.00K 100% 0.00kB/s 0:00:00
2.00K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=7/9)
input.map
32.77K 0% 31.25MB/s 0:00:00
28.31M 100% 178.81MB/s 0:00:00 (xfr#2, to-chk=6/9)
msa/
msa/prot/
msa/prot/prot.fasta
350 100% 2.22kB/s 0:00:00
350 100% 2.22kB/s 0:00:00 (xfr#3, to-chk=2/9)
msa/rna/
msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta
55 100% 0.35kB/s 0:00:00
55 100% 0.35kB/s 0:00:00 (xfr#4, to-chk=0/9)
Connection established.
INFO: cd /scratch/negishi/dklab/em-server/working/a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/ && sbatch -J msa_prot_a3244fec528e72cbb9b995c93db6f309 --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-mmseqs.sh prot.fasta
INFO: cd /scratch/negishi/dklab/em-server/working/a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/ && sbatch -J msa_rna_DC64A4734A2D898F --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-rnamsa.sh FASTA/DC64A4734A2D898F.fasta
--- Monitoring 2 jobs: ['40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438']
--- Monitoring 2 jobs: ['40440439', '40440438'] ---
Remaining active jobs: ['40440439', '40440438']
--- Monitoring 2 jobs: ['40440439', '40440438'] ---
Remaining active jobs: ['40440439', '40440438']
--- Monitoring 2 jobs: ['40440439', '40440438'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
Remaining active jobs: ['40440439', '40440438', '40440439']
--- Monitoring 3 jobs: ['40440439', '40440438', '40440439'] ---
[prot_MSA] Job 40440438 has completed.
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439', '40440439']
--- Monitoring 2 jobs: ['40440439', '40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
Remaining active jobs: ['40440439']
--- Monitoring 1 jobs: ['40440439'] ---
[rna_MSA_DC64A4734A2D898F] Job 40440439 has completed.
All jobs have completed.
receiving incremental file list
msa/prot/
msa/prot/done.txt
0 0% 0.00kB/s 0:00:00
29 100% 28.32kB/s 0:00:00 (xfr#1, to-chk=16/23)
msa/prot/results.zip
0 0% 0.00kB/s 0:00:00
951.64K 100% 20.17MB/s 0:00:00 (xfr#2, to-chk=14/23)
msa/prot/slurm-40440438.out
0 0% 0.00kB/s 0:00:00
81.86K 100% 327.63kB/s 0:00:00 (xfr#3, to-chk=13/23)
msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m
0 0% 0.00kB/s 0:00:00
690.13K 100% 811.99kB/s 0:00:00 (xfr#4, to-chk=11/23)
msa/prot/C6849859F9109C52/uniref100_hits.a3m
0 0% 0.00kB/s 0:00:00
196.61K 49% 183.73kB/s 0:00:01
327.68K 81% 138.29kB/s 0:00:00
399.79K 100% 168.65kB/s 0:00:02 (xfr#5, to-chk=10/23)
msa/rna/
msa/rna/DC64A4734A2D898F/
msa/rna/DC64A4734A2D898F/done.txt
0 0% 0.00kB/s 0:00:00
962 100% 117.43kB/s 0:00:00 (xfr#6, to-chk=5/23)
msa/rna/DC64A4734A2D898F/rnacentral.a3m
0 0% 0.00kB/s 0:00:00
44 100% 2.86kB/s 0:00:00 (xfr#7, to-chk=4/23)
msa/rna/logs/
msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log
0 0% 0.00kB/s 0:00:00
5.65K 100% 93.55kB/s 0:00:00 (xfr#8, to-chk=2/23)
msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log
0 0% 0.00kB/s 0:00:00
2.65K 100% 39.21kB/s 0:00:00 (xfr#9, to-chk=1/23)
msa/rna/working/
msa/rna/working/DC64A4734A2D898F.zip
0 0% 0.00kB/s 0:00:00
4.31K 100% 57.68kB/s 0:00:00 (xfr#10, to-chk=0/23)
adding: a3244fec528e72cbb9b995c93db6f309/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/uniref100_hits.a3m (in=399788) (out=84685) (deflated 79%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m (in=690128) (out=198600) (deflated 71%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/slurm-40440438.out (in=81860) (out=8285) (deflated 90%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/done.txt (in=29) (out=29) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/results.zip (in=951637) (out=951637) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/prot/prot.fasta (in=350) (out=231) (deflated 34%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/rnacentral.a3m (in=44) (out=39) (deflated 11%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/DC64A4734A2D898F/done.txt (in=962) (out=583) (deflated 39%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/FASTA/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/FASTA/DC64A4734A2D898F.fasta (in=55) (out=50) (deflated 9%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log (in=5652) (out=1645) (deflated 71%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log (in=2650) (out=820) (deflated 69%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/working/ (in=0) (out=0) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/msa/rna/working/DC64A4734A2D898F.zip (in=4312) (out=4312) (stored 0%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/input.json (in=1997) (out=655) (deflated 67%)
adding: a3244fec528e72cbb9b995c93db6f309/scratch/input.map .. (in=28312576) (out=26423561) (deflated 7%)
total bytes=30452040, compressed=27675132 -> 9% savings
sending incremental file list
./
input.json
2.00K 100% 0.00kB/s 0:00:00
2.00K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=21/23)
input.map
32.77K 0% 695.65kB/s 0:00:40
28.31M 100% 98.90MB/s 0:00:00 (xfr#2, to-chk=20/23)
msa/
msa/prot/
msa/prot/done.txt
29 100% 0.10kB/s 0:00:00
29 100% 0.10kB/s 0:00:00 (xfr#3, to-chk=16/23)
msa/prot/prot.fasta
350 100% 1.10kB/s 0:00:00
350 100% 1.10kB/s 0:00:00 (xfr#4, to-chk=15/23)
msa/prot/results.zip
32.77K 3% 102.56kB/s 0:00:08
951.64K 100% 2.86MB/s 0:00:00 (xfr#5, to-chk=14/23)
msa/prot/slurm-40440438.out
32.77K 40% 99.07kB/s 0:00:00
81.86K 100% 247.50kB/s 0:00:00 (xfr#6, to-chk=13/23)
msa/prot/C6849859F9109C52/
msa/prot/C6849859F9109C52/mmseqs_other_hits.a3m
32.77K 4% 98.77kB/s 0:00:06
690.13K 100% 2.01MB/s 0:00:00 (xfr#7, to-chk=11/23)
msa/prot/C6849859F9109C52/uniref100_hits.a3m
32.77K 8% 97.86kB/s 0:00:03
399.79K 100% 1.16MB/s 0:00:00 (xfr#8, to-chk=10/23)
msa/rna/
msa/rna/DC64A4734A2D898F/
msa/rna/DC64A4734A2D898F/done.txt
962 100% 2.84kB/s 0:00:00
962 100% 2.84kB/s 0:00:00 (xfr#9, to-chk=5/23)
msa/rna/DC64A4734A2D898F/rnacentral.a3m
44 100% 0.13kB/s 0:00:00
44 100% 0.13kB/s 0:00:00 (xfr#10, to-chk=4/23)
msa/rna/FASTA/
msa/rna/FASTA/DC64A4734A2D898F.fasta
55 100% 0.16kB/s 0:00:00
55 100% 0.16kB/s 0:00:00 (xfr#11, to-chk=3/23)
msa/rna/logs/
msa/rna/logs/msa_rna_DC64A4734A2D898F_1.log
5.65K 100% 15.95kB/s 0:00:00
5.65K 100% 15.95kB/s 0:00:00 (xfr#12, to-chk=2/23)
msa/rna/logs/msa_rna_DC64A4734A2D898F_2.log
2.65K 100% 7.46kB/s 0:00:00
2.65K 100% 7.46kB/s 0:00:00 (xfr#13, to-chk=1/23)
msa/rna/working/
msa/rna/working/DC64A4734A2D898F.zip
4.31K 100% 12.10kB/s 0:00:00
4.31K 100% 12.10kB/s 0:00:00 (xfr#14, to-chk=0/23)
==> Regular mode: job 11245929
==> Job 11245929 still in queue, waiting 60s...
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==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
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==> Job 11245929 still in queue, waiting 60s...
==> Job 11245929 still in queue, waiting 60s...
▶
cryo_em_map:
emd_48616.map
cryo_em_map: emd_48616.map
▶
fasta(DNA):
dna.fasta
fasta(DNA): dna.fasta
>A
TCAGCGTTAAAAAATTGATGATTGCCTTAGGGGC
>B
TTGCATCGAAACCACAGCCAAGGGAA
>C
TTCCCTTGGCTGTGGTTTCGATGCAAGCCCCTAA
>D
GGCAATCATCAATTTTTTAACGCTGA
▶
fasta(RNA):
rna.fasta
fasta(RNA): rna.fasta
>A
AGCCAUGCAAGCCCUGAAACCCAUUGCCUUAGUGCG
▶
fasta(protein):
protein.fasta
fasta(protein): protein.fasta
>A
MDNDITILAVDWSHEERKLAIFDGKKIRKKLPEPSSDVIIVAENIPQKYAAPFIEVGAKVLRCSTNATADARKNYQKKVDAAFAKNDENDSKVIWALYQTHPELFREMKLEPPLSSYYAIFKDYQEVRIRTGNRLYSDRTDAMEEFFKIVKKGEHELKKAVDKELENHPVYTQWLQHIKGIGPVVAGGLISLIGDIDRFDSVSKLWAYAGYSVDNGKVQKRKKGVASNWKNKIRTHCYNIVDSFIKQRTSVYRELYDAEKARQRPKVESDGHAHNRAVRKVAKVFLQHYWVVSRELAGFSVSKPWILEHGGHVDYIKPPHWNKVEIKPCKP
>B
MDNDITILAVDWSHEERKLAIFDGKKIRKKLPEPSSDVIIVAENIPQKYAAPFIEVGAKVLRCSTNATADARKNYQKKVDAAFAKNDENDSKVIWALYQTHPELFREMKLEPPLSSYYAIFKDYQEVRIRTGNRLYSDRTDAMEEFFKIVKKGEHELKKAVDKELENHPVYTQWLQHIKGIGPVVAGGLISLIGDIDRFDSVSKLWAYAGYSVDNGKVQKRKKGVASNWKNKIRTHCYNIVDSFIKQRTSVYRELYDAEKARQRPKVESDGHAHNRAVRKVAKVFLQHYWVVSRELAGFSVSKPWILEHGGHVDYIKPPHWNKVEIKPCKP
Notes
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