CryoZeta

Job ID: 689302810c6e881c15e7bdbcf6559783
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CryoZeta models. 5 top-scoring models are shown.

Job is finished!
==> Total residues: 1494, stages: 4
sending incremental file list
./
input.json

1.67K 100% 0.00kB/s 0:00:00
1.67K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=4/6)
input.map

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142.57M 55% 135.97MB/s 0:00:00
256.00M 100% 148.05MB/s 0:00:01 (xfr#2, to-chk=3/6)
msa/
msa/prot/
msa/prot/prot.fasta

785 100% 1.18kB/s 0:00:00
785 100% 1.18kB/s 0:00:00 (xfr#3, to-chk=0/6)
Connection established.
INFO: cd /scratch/negishi/dklab/em-server/working/689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/ && sbatch -J msa_prot_689302810c6e881c15e7bdbcf6559783 --parsable /depot/dkihara/data/dklab/em-server/pkgs/CryoZeta/helper/x-mmseqs.sh prot.fasta

--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
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--- Monitoring 1 jobs: ['36424623'] ---
[prot_MSA] Job 36424623 has completed.

All jobs have completed.
receiving incremental file list
msa/prot/
msa/prot/done.txt

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29 100% 28.32kB/s 0:00:00 (xfr#1, to-chk=9/15)
msa/prot/results.zip

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1.52M 100% 13.69MB/s 0:00:00 (xfr#2, to-chk=7/15)
msa/prot/slurm-36424623.out

0 0% 0.00kB/s 0:00:00
82.39K 100% 705.74kB/s 0:00:00 (xfr#3, to-chk=6/15)
msa/prot/D79C5CF59E7F7F57/
msa/prot/D79C5CF59E7F7F57/mmseqs_other_hits.a3m

0 0% 0.00kB/s 0:00:00
8.58K 100% 68.70kB/s 0:00:00 (xfr#4, to-chk=3/15)
msa/prot/D79C5CF59E7F7F57/uniref100_hits.a3m

0 0% 0.00kB/s 0:00:00
103.06K 100% 768.25kB/s 0:00:00 (xfr#5, to-chk=2/15)
msa/prot/E156B748D3B15606/
msa/prot/E156B748D3B15606/mmseqs_other_hits.a3m

0 0% 0.00kB/s 0:00:00
636.67K 100% 2.95MB/s 0:00:00 (xfr#6, to-chk=1/15)
msa/prot/E156B748D3B15606/uniref100_hits.a3m

0 0% 0.00kB/s 0:00:00
1.82M 100% 7.76MB/s 0:00:00 (xfr#7, to-chk=0/15)
adding: 689302810c6e881c15e7bdbcf6559783/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/input.map ........................ (in=256001024) (out=130481685) (deflated 49%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/mmseqs_other_hits.a3m (in=636670) (out=88975) (deflated 86%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/uniref100_hits.a3m (in=1815061) (out=248519) (deflated 86%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/prot.fasta (in=785) (out=472) (deflated 40%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/done.txt (in=29) (out=29) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/slurm-36424623.out (in=82385) (out=8710) (deflated 89%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/results.zip (in=1521890) (out=1521890) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/mmseqs_other_hits.a3m (in=8582) (out=3474) (deflated 60%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/uniref100_hits.a3m (in=103056) (out=25709) (deflated 75%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/input.json (in=1668) (out=779) (deflated 53%)
total bytes=260171150, compressed=132380242 -> 49% savings
sending incremental file list
./
input.json

1.67K 100% 0.00kB/s 0:00:00
1.67K 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=13/15)
input.map

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178.42M 69% 170.16MB/s 0:00:00
256.00M 100% 168.03MB/s 0:00:01 (xfr#2, to-chk=12/15)
msa/
msa/prot/
msa/prot/done.txt

29 100% 0.06kB/s 0:00:00
29 100% 0.06kB/s 0:00:00 (xfr#3, to-chk=9/15)
msa/prot/prot.fasta

785 100% 1.67kB/s 0:00:00
785 100% 1.67kB/s 0:00:00 (xfr#4, to-chk=8/15)
msa/prot/results.zip

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1.52M 100% 3.11MB/s 0:00:00 (xfr#5, to-chk=7/15)
msa/prot/slurm-36424623.out

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82.39K 100% 171.54kB/s 0:00:00 (xfr#6, to-chk=6/15)
msa/prot/D79C5CF59E7F7F57/
msa/prot/D79C5CF59E7F7F57/mmseqs_other_hits.a3m

8.58K 100% 17.79kB/s 0:00:00
8.58K 100% 17.79kB/s 0:00:00 (xfr#7, to-chk=3/15)
msa/prot/D79C5CF59E7F7F57/uniref100_hits.a3m

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103.06K 100% 212.77kB/s 0:00:00 (xfr#8, to-chk=2/15)
msa/prot/E156B748D3B15606/
msa/prot/E156B748D3B15606/mmseqs_other_hits.a3m

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msa/prot/E156B748D3B15606/uniref100_hits.a3m

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receiving incremental file list
./
CryoZeta_model_1.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 42.39MB/s 0:00:00 (xfr#1, to-chk=172/174)
CryoZeta_model_2.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 9.25MB/s 0:00:00 (xfr#2, to-chk=171/174)
CryoZeta_model_3.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 7.16MB/s 0:00:00 (xfr#3, to-chk=170/174)
CryoZeta_model_4.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 6.02MB/s 0:00:00 (xfr#4, to-chk=169/174)
CryoZeta_model_5.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 5.65MB/s 0:00:00 (xfr#5, to-chk=168/174)
done.txt

0 0% 0.00kB/s 0:00:00
32 100% 0.17kB/s 0:00:00 (xfr#6, to-chk=167/174)
slurm-10602048.out

0 0% 0.00kB/s 0:00:00
88.63K 100% 381.28kB/s 0:00:00 (xfr#7, to-chk=164/174)
output/
output/689302810c6e881c15e7bdbcf6559783/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Detection/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Detection/689302810c6e881c15e7bdbcf6559783.pt

0 0% 0.00kB/s 0:00:00
33.49M 24% 26.84MB/s 0:00:03
136.67M 100% 69.96MB/s 0:00:01 (xfr#8, to-chk=145/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Detection/689302810c6e881c15e7bdbcf6559783_CA.pdb

0 0% 0.00kB/s 0:00:00
119.16K 100% 169.14kB/s 0:00:00 (xfr#9, to-chk=144/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Detection/689302810c6e881c15e7bdbcf6559783_timing.txt

0 0% 0.00kB/s 0:00:00
205 100% 0.27kB/s 0:00:00 (xfr#10, to-chk=143/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/689302810c6e881c15e7bdbcf6559783_sample_0.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 1.30MB/s 0:00:00 (xfr#11, to-chk=142/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/689302810c6e881c15e7bdbcf6559783_sample_1.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 1.27MB/s 0:00:00 (xfr#12, to-chk=141/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/689302810c6e881c15e7bdbcf6559783_sample_2.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 1.23MB/s 0:00:00 (xfr#13, to-chk=140/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/689302810c6e881c15e7bdbcf6559783_sample_3.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 1.21MB/s 0:00:00 (xfr#14, to-chk=139/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Final/689302810c6e881c15e7bdbcf6559783_sample_4.cif

0 0% 0.00kB/s 0:00:00
1.07M 100% 1.17MB/s 0:00:00 (xfr#15, to-chk=138/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/saved_data/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/saved_data/output_dict_689302810c6e881c15e7bdbcf6559783.pt

0 0% 0.00kB/s 0:00:00
19.10M 42% 18.22MB/s 0:00:01
45.41M 100% 37.89MB/s 0:00:01 (xfr#16, to-chk=135/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/saved_data/scores.csv

0 0% 0.00kB/s 0:00:00
1.89K 100% 12.06kB/s 0:00:00 (xfr#17, to-chk=134/174)
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/seed_101/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/seed_101/predictions/
output/689302810c6e881c15e7bdbcf6559783/CryoZeta-Interpolate/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_0.cif

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adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.4/689302810c6e881c15e7bdbcf6559783_sample_1.cif (in=1066663) (out=287828) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.4/689302810c6e881c15e7bdbcf6559783_sample_4.cif (in=1066663) (out=287704) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.4/689302810c6e881c15e7bdbcf6559783_sample_2.cif (in=1066663) (out=287777) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.4/689302810c6e881c15e7bdbcf6559783_sample_0.cif (in=1066663) (out=287801) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_2_teaser.npz (in=138855) (out=137285) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_1_teaser.npz (in=138854) (out=137279) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_3_teaser.npz (in=138881) (out=137309) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_4_teaser.npz (in=138859) (out=137293) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_0_teaser.npz (in=138882) (out=137318) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/689302810c6e881c15e7bdbcf6559783_sample_3.cif (in=1066663) (out=287543) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/689302810c6e881c15e7bdbcf6559783_sample_1.cif (in=1066663) (out=287889) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/689302810c6e881c15e7bdbcf6559783_sample_4.cif (in=1066663) (out=287743) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/689302810c6e881c15e7bdbcf6559783_sample_2.cif (in=1066663) (out=287783) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_teaser/689302810c6e881c15e7bdbcf6559783_sample_0.cif (in=1066663) (out=287854) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_1_svd.npz (in=138884) (out=137319) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_4_svd.npz (in=138859) (out=137286) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_0_svd.npz (in=138870) (out=137290) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_3_svd.npz (in=138909) (out=137348) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_2_svd.npz (in=138917) (out=137340) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/689302810c6e881c15e7bdbcf6559783_sample_3.cif (in=1066663) (out=287854) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/689302810c6e881c15e7bdbcf6559783_sample_1.cif (in=1066663) (out=287930) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/689302810c6e881c15e7bdbcf6559783_sample_4.cif (in=1066663) (out=287677) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/689302810c6e881c15e7bdbcf6559783_sample_2.cif (in=1066663) (out=287685) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_svd_0.8/689302810c6e881c15e7bdbcf6559783_sample_0.cif (in=1066663) (out=287823) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_3.npz (in=138882) (out=137318) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_4.npz (in=138880) (out=137314) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_1.npz (in=138884) (out=137319) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_2.npz (in=138870) (out=137290) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_0.npz (in=138886) (out=137319) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/689302810c6e881c15e7bdbcf6559783_sample_3.cif (in=1066663) (out=287854) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/689302810c6e881c15e7bdbcf6559783_sample_1.cif (in=1066663) (out=287930) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/689302810c6e881c15e7bdbcf6559783_sample_4.cif (in=1066663) (out=287828) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/689302810c6e881c15e7bdbcf6559783_sample_2.cif (in=1066663) (out=287823) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions_superimposed/689302810c6e881c15e7bdbcf6559783_sample_0.cif (in=1066663) (out=287801) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_3.npz (in=149991) (out=148417) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_4.npz (in=149449) (out=147864) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_1.npz (in=150310) (out=148737) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_2.npz (in=149764) (out=148181) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/atom_arrays/689302810c6e881c15e7bdbcf6559783_sample_0.npz (in=149786) (out=148210) (deflated 1%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_summary_confidence_sample_1.json (in=2134) (out=464) (deflated 78%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_3.cif (in=1174411) (out=320710) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_summary_confidence_sample_3.json (in=2135) (out=432) (deflated 80%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_summary_confidence_sample_2.json (in=2138) (out=433) (deflated 80%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_1.cif (in=1174411) (out=319974) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_summary_confidence_sample_0.json (in=2134) (out=434) (deflated 80%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_summary_confidence_sample_4.json (in=2145) (out=437) (deflated 80%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_4.cif (in=1186383) (out=319960) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_2.cif (in=1162439) (out=319210) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/seed_101/predictions/689302810c6e881c15e7bdbcf6559783_sample_0.cif (in=1162439) (out=318782) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/saved_data/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/saved_data/output_dict_689302810c6e881c15e7bdbcf6559783.pt .... (in=45410255) (out=25589906) (deflated 44%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/output/689302810c6e881c15e7bdbcf6559783/CryoZeta/saved_data/scores.csv (in=1885) (out=664) (deflated 65%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/CryoZeta_model_4.cif (in=1066663) (out=287991) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/CryoZeta_model_5.cif (in=1066663) (out=287865) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/CryoZeta_model_1.cif (in=1066663) (out=288016) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/CryoZeta_model_2.cif (in=1066663) (out=287701) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/input.json (in=1668) (out=779) (deflated 53%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/CryoZeta_model_3.cif (in=1066663) (out=288143) (deflated 73%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/done.txt (in=32) (out=32) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/mmseqs_other_hits.a3m (in=8582) (out=3474) (deflated 60%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/D79C5CF59E7F7F57/uniref100_hits.a3m (in=103056) (out=25709) (deflated 75%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/slurm-36424623.out (in=82385) (out=8710) (deflated 89%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/results.zip (in=1521890) (out=1521890) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/ (in=0) (out=0) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/mmseqs_other_hits.a3m (in=636670) (out=88975) (deflated 86%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/E156B748D3B15606/uniref100_hits.a3m (in=1815061) (out=248519) (deflated 86%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/done.txt (in=29) (out=29) (stored 0%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/msa/prot/prot.fasta (in=785) (out=472) (deflated 40%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/input.map ........................ (in=256001024) (out=130481685) (deflated 49%)
adding: 689302810c6e881c15e7bdbcf6559783/scratch/slurm-10602048.out (in=88628) (out=10184) (deflated 89%)
total bytes=560071928, compressed=248803482 -> 56% savings
Processing: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_1.cif as Model 1
Processing: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_2.cif as Model 2
Processing: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_3.cif as Model 3
Processing: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_4.cif as Model 4
Processing: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_5.cif as Model 5
<gemmi.cif.Block CryoZeta_prediction_689302810c6e881c15e7bdbcf6559783>
Creating output directory: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/
Joined file: /net/kihara/scratch/webdklab/em-server/689302810c6e881c15e7bdbcf6559783/CryoZeta_model_all.cif
User Email zhan1797@purdue.edu
contour_level 0.35
resolution 2.7

cryo_em_map: emd_61047.map

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fasta(protein): protein.fasta

>9J03_1|Chains A[auth C], B[auth D]|Lymphocyte antigen 96|Homo sapiens (9606)
QKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
>9J03_2|Chains C[auth A], D[auth B]|Toll-like receptor 4|Homo sapiens (9606)
EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQMNK
>9J03_1|Chains A[auth C], B[auth D]|Lymphocyte antigen 96|Homo sapiens (9606)
QKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN
>9J03_2|Chains C[auth A], D[auth B]|Toll-like receptor 4|Homo sapiens (9606)
EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNITCQMNK

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